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Klebsiella phage vB_KleM_RaK2

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Study Name (Proposal Name) Enterobacteria phage vB_KleM-RaK2
Organism Name Klebsiella phage vB_KleM_RaK2
Taxon ID 2595698293
IMG Submission ID 51993
NCBI Taxon ID 1147094
GOLD IDs in IMG Database Study ID: Gs0105494  Project ID: Gp0080916  Analysis ID: Ga0061386  
GOLD Analysis Project Type Genome Analysis (Isolate)
Submission Type Primary
JGI Analysis Project Type Genome Analysis (Isolate)
SRA ID n/a
SRA Run n/a
JGI Data Utilization Status Not subject to JGI Data Policy, sequenced elsewhere
Is Public Yes
External Links JGI Portal ; NCBI/RefSeq:NC_019526
NCBI Taxonomy Lineage Viruses; dsDNA viruses, no RNA stage; Caudoviricetes; unclassified; unclassified; Alcyoneusvirus; Alcyoneusvirus RaK2
Sequencing Status Finished
Sequencing Center Vilnius University
High Quality Yes
Comment
Version Information  
Public Release Date 2014-10-27
Add Date 2014-10-27
Modified Date
IMG Release/Pipeline Version
IMG Annotation Version n/a
Annotation Method n/a
Project Information  
Culture Type Isolate
Cultured Yes
GenBank Anomalous Assembly No
Host Name Klebsiella
Is Published No
NCBI Assembly Accession GCF_000903335.1
NCBI Bioproject Accession PRJNA181223
NCBI GenBank ID NC_019526
Relevance Evolution
Sequencing Quality Level 6: Finished
Sequencing Status Complete
Sequencing Strategy Whole Genome Sequencing
Type Strain Unknown
Hint

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and set "Hide Zeroes in Genome Statistics" to "No".


Number % of Total
DNA, total number of bases 345809 100.00%
        DNA coding number of bases 313037 90.52%
        DNA G+C number of bases 109628 31.70% 1
                       
DNA scaffolds 1 100.00%
                       
Genes total number 541 100.00%
        Protein coding genes 534 98.71%
        RNA genes 7 1.29%
                tRNA genes 7 1.29%
        Protein coding genes with function prediction 93 17.19%
                without function prediction 441 81.52%
        Protein coding genes with enzymes 22 4.07%
        Protein coding genes connected to KEGG pathways3 18 3.33%
                not connected to KEGG pathways 516 95.38%
        Protein coding genes connected to KEGG Orthology (KO) 33 6.10%
                not connected to KEGG Orthology (KO) 501 92.61%
        Protein coding genes connected to MetaCyc pathways 14 2.59%
                not connected to MetaCyc pathways 520 96.12%
        Protein coding genes with COGs3 36 6.65%
                with KOGs3 10 1.85%
                with Pfam 85 15.71%
                with TIGRfam3 13 2.40%
                in internal clusters 10 1.85%
        Protein coding genes coding signal peptides 8 1.48%
        Protein coding genes coding transmembrane proteins 48 8.87%
COG clusters 33 0.71%
KOG clusters 10 0.21%
Pfam clusters 95 0.43%
TIGRfam clusters 13 0.29%
Internal clusters 5  
Predicted Viruses 1
Predicted Plasmids Pending process

Notes:

1 - GC percentage shown as count of G's and C's divided by the total number of bases.
The total number of bases is not necessarily synonymous with a total number of G's, C's, A's, and T's.
2 - Pseudogenes may also be counted as protein coding or RNA genes, so is not additive under total gene count.
3 - Graphical view available.



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